Name: Healthy Breakfast Egg Bites with Ham and Veggies Recipe
Prep time: 10 min
Cook time: 16 min
Total time: 26 min
Cuisine: American
Ingredients: 6 eggs; 3 tablespoons milk; 3/4 cup grated cheddar cheese; 1/4 cup green onion, sliced; salt and pepper to taste; 1 cup ham, cut into small cubes; 3/4 cup red bell pepper, chopped; 1/4 cup red onion, chopped; 1/2 tablespoon olive oil; cooking spray for greasing the pan

There's nothing quite like waking up to these fluffy, savory morsels packed with chunks of ham and colorful veggies. This Healthy Breakfast Egg Bites with Ham and Veggies Recipe seamlessly blends convenience with flavor and nutrition, making mornings way easier and tastier.

The image shows a stack of six egg muffins arranged closely together on a light brown cloth with a white marbled background visible. Each muffin has a golden brown top with a slightly uneven and bubbly texture, indicating they are baked. The sides of the muffins are a darker golden brown with a firm texture. Inside the muffins, there are small pieces of green vegetables and bits of ham, giving a colorful contrast to the yellow egg base. The muffins look soft and fluffy with a lightly crisp outside. Photo taken with an iphone --ar 2:3 --v 7

Jump to:

Why You'll Love This Recipe
Ingredients & Why They Work
Make It Your Way
Step-by-Step: How I Make Healthy Breakfast Egg Bites with Ham and Veggies Recipe
Top Tip
How to Serve Healthy Breakfast Egg Bites with Ham and Veggies Recipe
Make Ahead and Storage
Frequently Asked Questions:
Final Thoughts
Healthy Breakfast Egg Bites with Ham and Veggies Recipe

Why You'll Love This Recipe

I've been making these egg bites for years whenever I want a protein-packed, grab-and-go breakfast that doesn’t skimp on flavor. They come together quickly, can be customized endlessly, and even taste fantastic chilled or reheated.

Speedy Prep: You can whip these up in under 30 minutes — perfect for busy mornings or meal prep Sundays.
Balanced Nutrition: Eggs, ham, and veggies combine for a satisfying mix of protein, healthy fats, and vitamins.
Make-Ahead Friendly: These egg bites keep well in the fridge and freezer, so you always have a healthy option ready.
Customizable: Swap in your favorite veggies, cheeses, or even plant-based proteins — it’s your canvas!

Ingredients & Why They Work

Each ingredient in this Healthy Breakfast Egg Bites with Ham and Veggies Recipe plays a distinct role. The eggs provide that fluffy structure, while ham offers smoky saltiness. Veggies lend a fresh crunch and sweetness that brighten every bite.

Flat lay of six whole uncracked brown eggs, a small white bowl of milk, a small white bowl filled with grated cheddar cheese, a small white bowl of cubed fresh ham, a small white bowl of chopped red bell pepper, a small white bowl of chopped red onion, a small white bowl of sliced green onion, a small white bowl of olive oil, and a small white bowl containing salt and pepper placed on a clean white marble surface, soft natural light, photo taken with an iPhone, professional food photography style, fresh ingredients, white ceramic bowls, no bottles, no duplicates, no utensils, no packaging --ar 2:3 --v 7 --p m7354615311229779997

Eggs: The primary base adds protein and holds everything together, yielding a light yet satisfying texture.
Milk: A splash makes the egg mixture tender and keeps the bites from turning rubbery.
Grated Cheddar Cheese: Melts beautifully, giving a rich, gooey touch that complements the savory ham.
Ham: Diced ham adds meaty flavor and a satisfying chew that pairs perfectly with the eggs.
Red Bell Pepper: Brings a pop of color and a gentle sweetness to balance the saltiness.
Red Onion: Adds subtle sharpness and depth when sautéed, mellowing beautifully with the other flavors.
Green Onion: Freshness and mild bite sprinkled through the mix brighten the overall flavor profile.
Olive Oil: Used to soften the veggies and ham without overpowering the delicate egg bite flavors.
Salt and Pepper: Simple seasoning to enhance and balance all the ingredients.

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Note: You'll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Make It Your Way

One of my favorite parts about this Healthy Breakfast Egg Bites with Ham and Veggies Recipe is how easy it is to switch things up. I love throwing in whatever veggies I have on hand or trying different cheeses. You should definitely play around with it!

Variation: Sometimes, I swap ham for turkey or sautéed mushrooms when I want a change — both give deliciously different results.
Make it dairy-free: Use a non-dairy milk and skip the cheese or substitute with dairy-free options.
Veggie-packed: Add spinach or zucchini to maximize your morning veggies without sacrificing taste.
Spice it up: A pinch of cayenne or smoked paprika makes for a subtle but rewarding zing.

Step-by-Step: How I Make Healthy Breakfast Egg Bites with Ham and Veggies Recipe

Six small golden-yellow muffins with bits of green and orange inside are placed on a white rectangular plate. Each muffin is topped with a few bright green chopped spring onion rings. The muffins have a slightly crispy and browned bottom layer forming the base and rising slightly on the sides. The top layer is light and fluffy with a textured surface. Three fresh green onions and two orange slices with bright, juicy flesh are arranged on the plate near the muffins. The plate rests on a white marbled surface with a wooden background behind. Photo taken with an iphone --ar 2:3 --v 7

Step 1: Prep and Sauté the Veggies and Ham

First, preheat your oven to 350ºF and grease your mini muffin pan liberally with cooking spray to prevent sticking. Heat olive oil in a skillet over medium heat and toss in the diced ham, chopped red bell pepper, and red onion. Sauté for about 4-5 minutes until the veggies start to soften and the ham warms through. This step softens flavors and releases the natural sweetness of the peppers and onions — don’t rush it!

Step 2: Whisk Your Egg Mixture

Meanwhile, in a separate bowl or a large measuring cup, beat together the eggs and milk using a whisk. Adding milk keeps the bites tender and less dense. Next, stir in the green onions and grated cheddar cheese. If you prefer a creamier texture, using a fork instead of a whisk to blend helps make the mixture silkier — I switch between methods depending on how dense I want the bites.

Step 3: Combine Everything and Bake

Add the sautéed ham and vegetable mixture into the egg mixture, folding everything together gently but thoroughly. Pour the combined mixture evenly into the prepared mini muffin pan cups — filling almost to the top works best for that nice domed bite. Bake in your preheated oven for 14-16 minutes, keeping an eye out for golden brown tops and a firm center. Don’t overbake or they may dry out!

Step 4: Cool and Enjoy

Let your egg bites cool for a few minutes in the pan, then carefully pop them out with a knife or spatula if they stick. These are best served warm but also reheat beautifully for busy days. The smell alone is sometimes how I know breakfast is ready!

Top Tip

Through trial and error, I’ve learned that the key to perfect Healthy Breakfast Egg Bites with Ham and Veggies Recipe is all about timing, even heat, and ingredient balance. Here are a few tips that saved me many batches:

Even Sautéing: Make sure your ham and veggies get an even sauté to avoid any raw onion bites or uneven cooking.
Don’t Overfill the Tin: Filling the muffin cups just shy of the top prevents overflow and helps the egg bites cook evenly.
Cooling Time: Let the bites cool slightly before removing — they firm up and come out cleanly without breaking when you wait a few minutes.
Watch Your Oven: Every oven’s heat can vary. Start checking around 14 minutes and adjust to prevent drying out or undercooking.

How to Serve Healthy Breakfast Egg Bites with Ham and Veggies Recipe

breakfast egg bites - Serving Suggestion

Garnishes

I love sprinkling a little extra fresh green onion or even a dash of smoked paprika on top of my egg bites for a pop of color and taste before serving. A tiny pinch of flaky sea salt right before eating also elevates the flavor beautifully.

Side Dishes

Pair them with fresh fruit like berries or orange slices to add a juicy sweetness, or enjoy with a small mixed greens salad drizzled with lemon vinaigrette for a light, well-rounded meal.

Creative Ways to Present

For a brunch party, I like to serve the egg bites arranged on a wooden board with colorful garnishes like cherry tomatoes, microgreens, and little bowls of hot sauce or salsa. It makes the table feel festive and inviting!

Make Ahead and Storage

Storing Leftovers

I store leftover egg bites in an airtight container in the fridge and they easily last for 3-4 days. They’re perfect for quick breakfasts or snacks without sacrificing flavor or texture.

Freezing

Freezing is a game changer. Just lay the egg bites flat on a baking sheet to freeze individually before popping them into a sealed freezer bag. That way, you can pull out as many as you want and keep the rest fresh for up to 3 months.

Reheating

To reheat, I microwave for about 30-45 seconds or warm them in a toaster oven for a few minutes to keep a slight crisp on the edges. This quick method keeps the bites tasting almost like fresh-baked.

Frequently Asked Questions:

Can I make these egg bites vegan?

You can easily make a plant-based version by replacing the eggs with a chickpea flour batter or silken tofu blended with nutritional yeast for a cheesy flavor, and swapping ham with seasoned tofu or tempeh. Just remember, cooking times might vary.

What kind of muffin pan should I use?

A standard mini muffin pan works best to create perfectly portioned, bite-sized egg cups. Make sure to grease it generously or use silicone pans to prevent sticking.

Can I prepare the veggies and ham ahead of time?

Absolutely! Sauté the ham and veggies the night before and store them in the fridge. When you’re ready in the morning, just whisk the eggs and milk, combine everything, and bake. It speeds up the process!

How do I know when the egg bites are done baking?

Look for golden brown tops and a firm texture when gently pressed. If you’re unsure, insert a toothpick in the center — it should come out clean without wet egg mixture.

Final Thoughts

Honestly, this Healthy Breakfast Egg Bites with Ham and Veggies Recipe has become my go-to for busy mornings and last-minute snacks because it’s quick, nutritious, and just plain delicious. I’m confident you’ll enjoy the easy prep and the way these bite-sized wonders fuel your day. Trust me, once you try them, they’ll earn a permanent spot in your breakfast lineup.